Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 835
2011
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Optimization of non-aqueous media for capillary electrophoresis of dextromethorphan and its metabolites
Year: 2011, type: Conference abstract
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Photochemistry of S-Phenacyl Xanthates
Journal of Organic Chemistry, year: 2011, volume: 76, edition: 20, DOI
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p-Hydroxyphenacyl photoremovable protecting groups - Robust photochemistry despite substituent diversity
Canadian journal of chemistry, year: 2011, volume: 89, edition: 3
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Physiological relevance of FerB during chromate detoxification by Paracoccus denitrificans
Year: 2011, type: Conference abstract
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PMFLib – A TOOLKIT FOR FREE ENERGY CALCULATIONS
Year: 2011, type: Conference abstract
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PMFLib – A TOOLKIT FOR FREE ENERGY CALCULATIONS II
Year: 2011, type: Conference abstract
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Polymerisation and Surface Modification of Methacrylate Monoliths in Polyimide Channels and Polyimide Coated Capillaries using 660 nm Light Emitting Diodes
Journal of Chromatography A, year: 2011, volume: 1218, edition: 20, DOI
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Predicting pK(a) values of substituted phenols from atomic charges: Comparison of different quantum mechanical methods and charge distribution schemes
Journal of Chemical Information and Modeling, year: 2011, volume: 51, edition: 8
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Predicting pKa values of substituted phenols from atomic charges.
Year: 2011, type: Conference abstract
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Preliminary results on separation of dextromethorphan and its metabolites by non-aqueous capillary electrophoresis
Year: 2011, type: Conference abstract