Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 835
2011
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Recognition of transcription termination signal by the nuclear polyadenylated RNA-binding (Nab)3 protein
The Journal of Biological Chemistry, year: 2011, volume: 286, edition: 5, DOI
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Redistribution of electron density in pyridinium and pyrazinium guests induced by complexation with cucurbit[6]uril
New Journal of Chemistry, year: 2011, volume: 35, edition: 12, DOI
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Selectivity among Two Lectins: Probing the Effect of Topology, Multivalency and Flexibility of “Clicked” Multivalent Glycoclusters
Chemistry - A European Journal, year: 2011, volume: 17, edition: 7, DOI
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Simulation of 129Xe NMR chemical shift of Xe@C60 dissolved in liquid benzene
Year: 2011, type: Conference abstract
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Simulations of 129 Xe NMR chemical shift of atomic xenon dissolved in liquid benzene
Theoretical Chemistry Accounts, year: 2011, volume: 129, edition: 3-5, DOI
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Simultaneous whole-body gamma-ray spectrometry of 24Na and 82Br radionuclides: Relation between excretion rates of sodium and bromide ions
Year: 2011, type: Conference abstract
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Stanovení životaschopnosti embryí v asistované reprodukci pomocí kapilární elektroforézy
Year: 2011, type: Conference abstract
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Structural analysis of delta-subnit of RNA-polymerase by X-ray
Year: 2011, type: Conference abstract
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Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana.
The Plant Journal, year: 2011, volume: 67, edition: 5, DOI
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Structure and function of lectins from Burkholderia cenocepacia - similar, yet different
Year: 2011, type: Conference abstract