Project information
Biomolecular centre
- Project Identification
- LC06030
- Project Period
- 3/2006 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Basic Research Center
- MU Faculty or unit
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Central European Institute of Technology
- prof. RNDr. Vladimír Sklenář, DrSc.
- Keywords
- Cancer drugs, biosensors, lectins, molecular modeling of biomolecules, biomolecular NMR
- Cooperating Organization
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Institute of Biophysics
- Responsible person prof. RNDr. Jiří Šponer, DrSc.
- Responsible person doc. RNDr. Ivan Rychlík, Ph.D.
The main goal of the project is to elevate the structural biology in the Czech Republic from studies of individual biomacromolecules to investigations of their complexes. This goal will be achieved by implementation of up-to-date methodology in selected scientific fields (NMR spectroscopy, computational modeling) and by focusing on problems, which are currently in the centre of interest of contemporary life sciences. Among others, key cell processes such as preservation of genome stability and DNA repair, ribosomal protein synthesis, or information transfer by recognition (lectins) will be studied. Selected research projects will lead eventually to bioanalytical (biosensors) and biomedical (vaccines, chemotherapeutics) outcomes with potential applications in research and development. To reach the outlined goals, active collaboration of participating institutions is inevitable. A number of projects will require also a broad international collaboration.
Results
The main goal of the project is to help to drive structural biology in the Czech Republic from studies on single biomacromolecules to studies on biomacromolecular complexes. To achieve the goal, we will implement recent advances in selected key methods in the field (NMR spectrometry, computer modeling) and also contribute to their development. The research will be oriented not only to the structure of biomacromolecules but will also include studies of structure/function relationship. It will touch suchimportant phenomena of the cell life as keeping genome stability, DNA repair, protein synthesis in the ribosome or information transfer via recognition (lectins). Selected parts of the research will be devoted to bioanalytical (biosensors) or biomedicinal(vaccines, chemotherapeutics) projects capable of providing results with potential applications at the practical level. By solving the above scientific tasks, the team will increase its international competitiveness. At the same time, the project will
Publications
Total number of publications: 284
2008
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TRITON: a graphical tool for ligand-binding protein engineering
Bioinformatics, year: 2008, volume: 24, edition: 17
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Ups and Downs of Homologous Recombination and Repair of DNA Double-Strand Breaks
Year: 2008, type: R&D Presentation
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Web server to identify similarity of amino acid motifs to compounds (SAAMCO)
Journal of Chemical Information and Modeling, year: 2008, volume: 48, edition: 7
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www.rnaworkbench.com: A new program for analyzing RNA interference
Computer Methods and Programs in Biomedicine, year: 2008, volume: 90, edition: 1
2007
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13C detected NMR experiments for measuring chemical shifts and coupling constants in nucleic acid bases
Journal of Biomolecular NMR, year: 2007, volume: 39, edition: 4
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13C-detected NMR experiments for measuring scalar and dipolar coupling in RNA
Viral RNA: Structure, Function and Targeting, year: 2007
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15N NMR Spectroscopy in Structural Analysis: An Update (2001-2005)
Current Organic Chemistry, year: 2007, volume: 11, edition: 13, DOI
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1H, 13C and 15N NMR coordination shifts in gold(III), cobalt(III), rhodium(III) chloride complexes with pyridine, 2,2'-bipyridine and 1,10-phenantroline
Magnetic Resonance in Chemistry, year: 2007, volume: 45, edition: 1, DOI
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3. Structural and thermodynamical characterization of BclA, a lectin from Burkholderia cepacia complex (BCC)
14th European Carbohydrate Symposium, EUROCARB 14, year: 2007
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Acetylcholinesterases - the similarities and differences
Journal of Enzyme Inhibition and Medicinal Chemistry, year: 2007, volume: 22, edition: 4