Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 836
2006
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Biooxidation of elemental sulfur and its impacts on metabolic parameters in Acidithiobacillus ferrooxidans
X. Pracovní setkání biochemiků a molekulárních biologů, year: 2006
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Biosorption of heavy metals by Pseudomonas putida cells
Environmental changes and biological assessement, year: 2006
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Budoucí možnosti genové terapie bolesti
Neurologie pro praxi, year: 2006, volume: 2006, edition: 2
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Cations and Hydration in Catalytic RNA: Molecular Dynamics of the Hepatitis Delta Virus Ribozyme
Biophysical Journal, year: 2006, volume: 91, edition: -
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CAVER: A New Tool to Explore Routes from Protein Clefts, Pockets and Cavities
BMC BIOINFORMATICS, year: 2006, volume: 7, edition: 7
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Computer-assisted Directed Evolution of Haloalkane Dehalogenase DhaA Towards Degradation of 1,2,3-Trichloropropane
Year: 2006, type: R&D Presentation
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Conformational Dependence of 31P Chemical Shift Tensors
Year: 2006, type: Conference abstract
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Determination of cyanide in microliter samples by CE using on-capillary enzymatic reaction with rhodanese
Journal of Chromatography A, year: 2006, volume: 1120, edition: 1-2
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Determination of enzymatic activity by capillary electrophoresis (review).
Journal of Chromatography B, year: 2006, volume: 841, edition: 1-2
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Development of a combined setup for simultaneous detection of total and glycated haemoglobin content in blood samples
Biosensors & Bioelectronics, year: 2006, volume: 21, edition: 10