Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 836
2006
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Development of a microtiter plate-based method for determination of degradation profile of nitrophenolic compounds
Journal of Microbiological Methods, year: 2006, volume: 65, edition: 3
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DIFFERENT MECHANISMS OF CDK5 AND CDK2 ACTIVATION AS REVEALED BY CDK5/P25 AND CDK2/CYCLIN A DYNAMICS
The Journal of biological chemistry, year: 2006, volume: 281, edition: 11
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DNA Binding and Strand Annealing Properties of the Human BRCA2 DNA Binding Domain
Year: 2006, type: R&D Presentation
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Dynamics of Protein-Ligand Interactions
Frontieres of Biomolecular NMR, year: 2006
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Effect of Solvation on Pinched Cone-Pinched Cone Interconversion of Tetraethoxycalix[4]arene and Tetraethoxythiacalix[4]arene
Journal of Physical Chemistry A, year: 2006, volume: 110, edition: 3
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ELECTROPHORETICALLY MEDIATED MICROANALYSIS AS A TOOL FOR KINETIC STUDIES OF ENZYMES
XX. Biochemický zjazd, year: 2006
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Electrophoretically mediated microanalysis as a tool for the enzyme study
CD of the abstracts of the 29th international symposium on capillary chromatography, year: 2006
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Engineering of enantioselective enzyme by cumulative mutagenesis.
Year: 2006, type: R&D Presentation
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Engineering of Enantioselective Haloalkane Dehalogenase by Cumulative Mutagenesis
Year: 2006, type: R&D Presentation
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Engineering of Haloalkane Dehalogenase DhaA from Rhodococcus rhodochrous NCIMB 13064 Towards Higher Enantioselectivity
Year: 2006, type: Appeared in Conference without Proceedings