CAVER 2.1

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This publication doesn't include Faculty of Economics and Administration. It includes Faculty of Informatics. Official publication website can be found on muni.cz.
Authors

BENEŠ Petr KOZLÍKOVÁ Barbora STRNAD Ondřej ŠUSTR Vilém CHOVANCOVÁ Eva PAVELKA Antonín BREZOVSKÝ Jan SZABÓ Tibor ZAMBORSKÝ Matúš SOCHOR Jiří DAMBORSKÝ Jiří BIEDERMANNOVÁ Lada

Year of publication 2010
MU Faculty or unit

Faculty of Informatics

Web http://decibel.fi.muni.cz/caver/
Description CAVER algorithm enables rapid and fully automated calculation of specific pathways called channels in protein molecules. It enables to compute channels in static molecules as well as in molecular dynamics. CAVER is distributed as standalone plugin for PyMOL and also as a part of CAVER Viewer visualization tool. It enables to display computed channels and to perform various subsequent analyses. CAVER Viewer is available as a standalone software or as a Java Web Start application.
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