Conformations of flanking bases in HIV-1 RNA DIS kissing complexes studied by Molecular Dynamics

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Authors	RÉBLOVÁ Kamila FADRNÁ Eva JOANNA Sarzynska KULINSKI Tadeusz KULHÁNEK Petr ENNIFAR Eric KOČA Jaroslav SPONER Jiri
Year of publication	2007
Type	Article in Periodical
Magazine / Source	Biophysical Journal
MU Faculty or unit	Faculty of Science
Citation
Field	Biophysics
Keywords	molecular dynamics simulations; kissing loop complexes; flanking bases; RNA
Description	Flanking bases are important for formation and stability of kissing loop complexes. Extended MD study was carried out with aim to describe basic structural and dynamics properties of these bulge bases to better understand their roles.
Related projects:	Proteins in metabolism and interaction of organisms with the environment Biomolecular centre