Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 835
2005
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Structure and dynamics of sarin-inhibited acetylcholinesterase
Modeling Interactions in Biomolecules II, year: 2005
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Structure and dynamics of sarin-inhibited acetylcholinesterase
Strukturní biofyzika makromolekul, year: 2005
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Study of Enzymes by means of capillary electrophoresis (Lecture)
Sborník konference "Chiranal 2005", year: 2005
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STUDY OF STRUCTURE AND DYNAMICS OF RIBOSOMAL HELIX 44 USING MOLECULAR DYNAMICS METHODS
Workshop on Modelling interactions in Biomolecules II, year: 2005
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Synthesis, spectral study and cytotoxicity of platinum(II) complexes with 2,9-disubstituted-6-benzylaminopurines
Journal of Inorganic Biochemistry, year: 2005, volume: 99, edition: 11
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The Electrodeless Discharge Lamp: A Prospective Tool for Photochemistry Part 5: Fill Material-Dependent Emission Characteristics
Journal of Photochemistry and Photobiology A: Chemistry, year: 2005, volume: 171, edition: 1
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The fucose-binding lectin from Ralstonia solanacearum: a new type of beta-propeller architecture formed by oligomerisation and interacting with fucoside, fucosyllactose and plant xyloglucan
Journal of Biological Chemistry, year: 2005, volume: 280, edition: 30
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The Mechanism of Inhibition of the Cyclin-Dependent Kinase-2 as Revealed by the Molecular Dynamics Study on the Complex CDK2 with the Peptide Substrate HHASPRK
Protein Science, year: 2005, volume: 14, edition: 2
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Theoretical and experimental NMR study of protopine hydrochloride isomers
Magnetic Resonance in Chemistry, year: 2005, volume: 43, edition: 1
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TRITON: graphic software for modelling protein mutants and calculation reaction pathways
Materials Structure in Chemistry, Biology, Physics and Technology, year: 2005