Classification and energetics of the base-phosphate interactions in RNA

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Authors

ZIRBEL Craig ŠPONER Judit ŠPONER Jiří STOMBAUGH Jesse LEONTIS Neocles

Year of publication 2009
Type Article in Periodical
Magazine / Source Nucleic Acids Research
MU Faculty or unit

Faculty of Science

Citation
Field Biophysics
Keywords RNA; base; phosphate; database search; quantum chemical calculations
Description By extracting and superimposing base-phosphate (BPh) interactions from a reduced redundancy subset of 3D structures from the PDB, we identified recurrent phosphate-binding sites on the RNA bases. Quantum chemical calculations were carried out on model systems representing each BPh interaction.
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