Solution structure of the dodecamer d-(CATGGGCC-CATG)(2) is B-DNA. Experimental and molecular dynamics study

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Authors

DORNBERGER Utz ŠPAČKOVÁ Naděžda WALTER Axel GOLLMICK Friedrich A. ŠPONER Jiří FRITZSCHE hartmut

Year of publication 2001
Type Article in Periodical
Magazine / Source Journal of Biomolecular Structure and Dynamics
MU Faculty or unit

Faculty of Science

Citation
Field Biophysics
Keywords PARTICLE MESH EWALD; NUCLEIC-ACIDS; AB-INITIO; CONFORMATIONAL-ANALYSIS; COUPLING-CONSTANTS; AQUEOUS-SOLUTION; FORCE-FIELD; NMR; BASE; DUPLEX
Description The DNA duplex d-(CATGGGCCCATG)(2) has been studied in solution by FTIR. NMR and CD. The experimental approaches have been complemented by series of large-scale unrestrained molecular dynamics simulation with explicit inclusion of solvent and counterions .
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