Project information
Biomolecular centre
- Project Identification
- LC06030
- Project Period
- 3/2006 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Basic Research Center
- MU Faculty or unit
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Central European Institute of Technology
- prof. RNDr. Vladimír Sklenář, DrSc.
- Keywords
- Cancer drugs, biosensors, lectins, molecular modeling of biomolecules, biomolecular NMR
- Cooperating Organization
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Institute of Biophysics
- Responsible person prof. RNDr. Jiří Šponer, DrSc.
- Responsible person doc. RNDr. Ivan Rychlík, Ph.D.
The main goal of the project is to elevate the structural biology in the Czech Republic from studies of individual biomacromolecules to investigations of their complexes. This goal will be achieved by implementation of up-to-date methodology in selected scientific fields (NMR spectroscopy, computational modeling) and by focusing on problems, which are currently in the centre of interest of contemporary life sciences. Among others, key cell processes such as preservation of genome stability and DNA repair, ribosomal protein synthesis, or information transfer by recognition (lectins) will be studied. Selected research projects will lead eventually to bioanalytical (biosensors) and biomedical (vaccines, chemotherapeutics) outcomes with potential applications in research and development. To reach the outlined goals, active collaboration of participating institutions is inevitable. A number of projects will require also a broad international collaboration.
Results
The main goal of the project is to help to drive structural biology in the Czech Republic from studies on single biomacromolecules to studies on biomacromolecular complexes. To achieve the goal, we will implement recent advances in selected key methods in the field (NMR spectrometry, computer modeling) and also contribute to their development. The research will be oriented not only to the structure of biomacromolecules but will also include studies of structure/function relationship. It will touch suchimportant phenomena of the cell life as keeping genome stability, DNA repair, protein synthesis in the ribosome or information transfer via recognition (lectins). Selected parts of the research will be devoted to bioanalytical (biosensors) or biomedicinal(vaccines, chemotherapeutics) projects capable of providing results with potential applications at the practical level. By solving the above scientific tasks, the team will increase its international competitiveness. At the same time, the project will
Publications
Total number of publications: 284
2010
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Structural basis of the affinity for oligomannosides and analogs displayed by BC2L-A, a Burkholderia cenocepacia soluble lectin
Glycobiology, year: 2010, volume: 20, edition: 1, DOI
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Structural study of 8-azole derivatives of protoberberine alkaloids: experimental and quantum chemical approach
Tetrahedron, year: 2010, volume: 66, edition: 47
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Structure and dynamics of an RNA polymerase subunit unique for gram-positive bacteria
Year: 2010, type: Conference abstract
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Structure and dynamics of RNA polymerase delta subunit from Bacillus subtilis determined by NMR spectroscopy
Year: 2010, type: Conference abstract
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Structure determination of an RNA polymerase subunit unique for gram-positive bacteria
Year: 2010, type: Conference abstract
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Synthetic N-acetylglucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69+ NK cells and killer lymphocytes upon dimerization via a hydrophilic flexible linker
Journal of Medicinal Chemistry, year: 2010, volume: 53, edition: 10
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Theoretical Studies on the Intermolecular Interactions of Potentially Primordial Base-Pair Analogues
Chemistry – A European Journal, year: 2010, volume: 16, edition: 10
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Understanding the NMR chemical shifts for 6-halopurines : role of structure, solvent and relativistic effects
Physical Chemistry Chemical Physics, year: 2010, volume: 12, edition: 19, DOI
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Why acetylcholinesterase reactivators do not work in butyrylcholinesterase
Journal of Enzyme Inhibition and Medicinal Chemistry, year: 2010, volume: 25, edition: 3
2009
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A global benchmark study using affinity-based biosensors
Analytica Chimica Acta, year: 2009, volume: 386, edition: 2